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De-identify multiple documents with the de-identification service in python Learn how to bulk de-identify documents with the asynchronous de-identification service in python. kimiamavon-msft kimiamavon azure-health-data-services deidentification-service tutorial 10/23/2025
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--- title: De-identify multiple documents with the de-identification service in python description: "Learn how to bulk de-identify documents with the asynchronous de-identification service in python." author: kimiamavon-msft ms.author: kimiamavon ms.service: azure-health-data-services ms.subservice: deidentification-service ms.topic: tutorial ms.date: 10/23/2025 #customer intent: As an IT admin, I want to de-identify multiple documents with the de-identification service in python --- # De-identify multiple documents with the asynchronous de-identification service The Azure Health Data Services de-identification service can de-identify documents in Azure Storage via an asynchronous job. If you have many documents that you would like to de-identify, using a job is a good option. Jobs also provide consistent surrogation, meaning that surrogate values in the de-identified output match across all documents. For more information about de-identification, including consistent surrogation, see [What is the de-identification service?](overview.md) When you choose to store documents in Azure Blob Storage, you're charged based on Azure Storage pricing. This cost isn't included in the de-identification service pricing. [Explore Azure Blob Storage pricing](https://azure.microsoft.com/pricing/details/storage/blobs). This tutorial covers how to configure and run the service via the asynchronous (Batch) API. ## Prerequisites * An Azure account with an active subscription. [Create an account for free](https://azure.microsoft.com/pricing/purchase-options/azure-account?cid=msft_learn). * A de-identification service with system-assigned managed identity. [Deploy the de-identification service](quickstart.md). 1. In the top search bar, type `De-identification`. 2. Select **De-identification Services** from the search results. 3. Select **Create**. 4. Fill in required subscription and instance details. 5. Select **Review + create**, then **Create**. 6. Once deployment completes, go to the resource and copy your **Service URL** and **Subscription ID**. > [!IMPORTANT] > To use the batch (asynchronous) API with the multilingual model, ensure you have the **DeID Batch Data Owner** role assigned to your identity in **Access Control (IAM)**. Install [Azure CLI](/cli/azure/install-azure-cli) and open your terminal of choice. In this tutorial, we're using PowerShell. ## Create a storage account and container 1. Set your context, substituting the subscription name containing your de-identification service for the `<subscription_name>` placeholder: ```powershell az account set --subscription "<subscription_name>" ``` 2. Save a variable for the resource group, substituting the resource group containing your de-identification service for the `<resource_group>` placeholder: ```powershell $ResourceGroup = "<resource_group>" ``` 3. Create a storage account, providing a value for the `<storage_account_name>` placeholder: ```powershell $StorageAccountName = "<storage_account_name>" $StorageAccountId = $(az storage account create --name $StorageAccountName --resource-group $ResourceGroup --sku Standard_LRS --kind StorageV2 --min-tls-version TLS1_2 --allow-blob-public-access false --query id --output tsv) ``` 4. Assign yourself a role to perform data operations on the storage account: ```powershell $UserId = $(az ad signed-in-user show --query id -o tsv) az role assignment create --role "Storage Blob Data Contributor" --assignee $UserId --scope $StorageAccountId ``` 5. Create a container to hold your sample document: ```powershell az storage container create --account-name $StorageAccountName --name deidtest --auth-mode login ``` ## Upload a sample document Next, you upload a document that contains synthetic PHI: - Example with English data: ```powershell $DocumentContent = "The patient came in for a visit on 10/12/2023 and was seen again November 4th at Contoso Hospital." az storage blob upload --data $DocumentContent --account-name $StorageAccountName --container-name deidtest --name deidsample.txt --auth-mode login ``` - Example with French data: ```powershell $DocumentContent = "Julie Tremblay a été consultée par Dr. Marc Lavoie à l'Hôpital de la Cité-des-Prairies le 10 Janvier" az storage blob upload --data $DocumentContent --account-name $StorageAccountName --container-name deidtest --name deidsample_fr.txt --auth-mode login ``` ## Grant the de-identification service access to the storage account In this step, you grant the de-identification service's system-assigned managed identity role-based access to the container. You grant the **Storage Blob Data Contributor** role because the de-identification service reads the original document and writes the de-identified output documents. Substitute the name of your de-identification service for the `<deid_service_name>` placeholder: ```powershell $DeidServicePrincipalId=$(az resource show -n <deid_service_name> -g $ResourceGroup --resource-type microsoft.healthdataaiservices/deidservices --query identity.principalId --output tsv) az role assignment create --assignee $DeidServicePrincipalId --role "Storage Blob Data Contributor" --scope $StorageAccountId ``` > To verify that the de-identification service has access to the storage account, you can check on the Azure portal under **storage accounts**. Under the **Storage center** and **Resources** tab, click your storage account name. Select **Access control (IAM)**. In the search bar, search for the name of your de-identification service ($ResourceGroup). ## Configure network isolation on the storage account Next, you update the storage account to disable public network access and only allow access from trusted Azure services such as the de-identification service. After running this command, you won't be able to view the storage container contents without setting a network exception. Learn more at [Configure Azure Storage firewalls and virtual networks](/azure/storage/common/storage-network-security). ```powershell az storage account update --name $StorageAccountName --public-network-access Disabled --bypass AzureServices ``` ## Running the service using the python SDK The code below contains a sample from the [Azure Health De-identification SDK for Python](/python/api/overview/azure/health-deidentification). > This example uses the French Canada language-locale pair. See the full list our service supports [here.](languages-supported.md) ```Bash """ FILE: deidentify_documents_async.py DESCRIPTION: This sample demonstrates a basic scenario of de-identifying documents in Azure Storage. Taking a container URI and an input prefix, the sample will create a job and wait for the job to complete. USAGE: python deidentify_documents_async.py Set the environment variables with your own values before running the sample: 1) endpoint - the service URL endpoint for a de-identification service. 2) storage_location - an Azure Storage container endpoint, like "https://<storageaccount>.blob.core.windows.net/<container>". 3) INPUT_PREFIX - the prefix of the input document name(s) in the container. For example, providing "folder1" would create a job that would process documents like "https://<storageaccount>.blob.core.windows.net/<container>/folder1/document1.txt". """ import asyncio from azure.core.polling import AsyncLROPoller from azure.health.deidentification.aio import DeidentificationClient from azure.health.deidentification.models import ( DeidentificationJob, SourceStorageLocation, TargetStorageLocation, DeidentificationJobCustomizationOptions, DeidentificationOperationType, ) from azure.identity.aio import DefaultAzureCredential import uuid async def deidentify_documents_async(): endpoint = "<YOUR SERVICE URL HERE>" ### Replace storage_location = "https://<CONTAINER NAME>.blob.core.windows.net/deidtest/" ### Replace <CONTAINER NAME> inputPrefix = "deidsample" outputPrefix = "_output" locale = "fr-CA" ### e.g., fr-FR, de-DE, etc credential = DefaultAzureCredential() client = DeidentificationClient(endpoint, credential) jobname = f"sample-job-{uuid.uuid4().hex[:8]}" job = DeidentificationJob( ### Set the operation to Surrogate: operation_type=DeidentificationOperationType.SURROGATE, source_location=SourceStorageLocation( location=storage_location, prefix=inputPrefix, ), target_location=TargetStorageLocation(location=storage_location, prefix=outputPrefix, overwrite=True), ### Locale customization for surrogate generation: customizations=DeidentificationJobCustomizationOptions(surrogate_locale=locale), ) async with client: lro: AsyncLROPoller = await client.begin_deidentify_documents(jobname, job) finished_job: DeidentificationJob = await lro.result() await credential.close() print(f"Job Name: {finished_job.job_name}") print(f"Job Status: {finished_job.status}") # Succeeded print(f"File Count: {finished_job.summary.total_count if finished_job.summary is not None else 0}") async def main(): await deidentify_documents_async() if __name__ == "__main__": asyncio.run(main()) ``` Get job status: ```Bash curl -X GET \ -H "Authorization: Bearer $(<token.txt)" \ -H "Content-Type: application/json" \ "<your Service URL>/jobs/<unique-job-name>?api-version=2024-12-15-preview" ``` ## Clean up resources Once you're done with the storage account, you can delete the storage account and role assignments: ```powershell az role assignment delete --assignee $DeidServicePrincipalId --role "Storage Blob Data Contributor" --scope $StorageAccountId az role assignment delete --assignee $UserId --role "Storage Blob Data Contributor" --scope $StorageAccountId az storage account delete --ids $StorageAccountId --yes ``` ## Next steps > [!div class="nextstepaction"] > [Quickstart: Azure Health De-identification client library for .NET](quickstart-sdk-net.md)
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